Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
516
total RNA-seq
84
RNA microarray
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
522
Transcription
14
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
604
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
288
October, 2019
216
June, 2019
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
94
February, 2023
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
524
tsv
506
bam
495
bigWig
89
txt
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
627
Homo sapiens
Biosample type
568
tissue
30
cell line
26
in vitro differentiated cells
3
primary cell
Organ
457
connective tissue
388
adipose tissue
150
bone element
69
blood vessel
69
heart
69
vasculature
artery
27
pancreas
26
epithelium
12
brain
9
limb
8
kidney
8
skeleton
4
liver
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
627
AMP
Genome assembly (visualization)
510
hg19
504
GRCh38
Lab
627
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
129
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
artery
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
627 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
subcutaneous adipose tissue
3
+ See 35 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
See all biosamples
Download