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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
Hi-C
4
single cell RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
1
total RNA-seq
Assay category
17
DNA binding
5
3D chromatin structure
5
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
12
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
9
May, 2019
9
October, 2019
4
August, 2021
3
July, 2019
3
March, 2020
1
February, 2020
1
November, 2017
Available data
19
bam
6
bigWig
6
tsv
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
30
Homo sapiens
Biosample type
17
tissue
13
primary cell
Organ
301
pancreas
260
liver
224
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
66
hg19
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
assembly!
GRCh38
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
WGBS
pCHi-C
total RNA-seq
tissue
aorta
2
1
4
1
1
ascending aorta
3
1
thoracic aorta
4
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
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