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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
15
DNA binding
9
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
11
May, 2019
8
July, 2019
6
October, 2019
4
August, 2021
4
March, 2020
3
June, 2019
2
November, 2017
1
February, 2020
Available data
28
bam
18
bigWig
10
bed narrowPeak
10
tsv
9
bigBed narrowPeak
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
39
Homo sapiens
Biosample type
26
tissue
13
primary cell
Organ
785
pancreas
688
liver
606
connective tissue
459
adipose tissue
425
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
2
1
1
4
2
1
thoracic aorta
5
2
1
ascending aorta
4
1
2
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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