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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
755
ChIP-seq
746
total RNA-seq
172
single cell RNA-seq
167
DNase-seq
161
ATAC-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
932
Transcription
755
DNA binding
347
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
535
histone modification
534
histone
286
narrow histone mark
248
broad histone mark
147
control
73
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
225
August, 2021
213
October, 2019
193
May, 2020
157
June, 2019
137
August, 2017
108
May, 2019
82
November, 2017
80
April, 2019
70
July, 2019
48
December, 2017
47
September, 2023
42
February, 2023
42
May, 2022
40
May, 2024
31
March, 2020
23
October, 2018
22
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1437
bam
1369
bigWig
797
tsv
796
bed narrowPeak
471
bigBed narrowPeak
222
tagAlign
189
bed broadPeak
174
bed bed3+
166
bigBed broadPeak
157
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2190
Homo sapiens
Biosample type
2192
tissue
740
primary cell
476
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
artery
56
eye
43
nerve
20
lung
18
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2125
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1408
GRCh38
1312
hg19
Lab
1903
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
artery
pancreas
month_released!
December, 2018
BIOSAMPLE
ASSAY
2192 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
1
2
20
1
3
1
1
1
kidney
27
49
64
13
75
6
1
1
1
bone element
84
heart left ventricle
35
3
18
3
2
1
4
1
1
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