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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
997
histone modification
996
histone
narrow histone mark
487
broad histone mark
481
transcription factor
330
control
111
RNA binding protein
89
recombinant protein
34
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
August, 2017
3
December, 2017
December, 2018
Available data
34
bam
34
bed narrowPeak
34
bigWig
34
fastq
32
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
28
cell line
3
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
8
blood
8
bodily fluid
2
connective tissue
1
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
organ_slims!
artery
month_released!
December, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
20
GM12878
8
in vitro differentiated cells
adipocyte
2
hepatocyte
1
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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