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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
508
total RNA-seq
84
RNA microarray
34
pCHi-C
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
10
Hi-C
6
WGBS
5
ChIP-seq
3
snDrop-seq
Assay category
526
Transcription
45
DNA accessibility
10
3D chromatin structure
6
DNA methylation
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
control
1
transcription factor
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
288
October, 2019
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
552
tsv
522
bam
515
bigWig
89
txt
45
fastq
14
bed narrowPeak
12
bedpe bed3+
10
hic
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
2
tagAlign
Organism
713
Homo sapiens
Biosample type
585
tissue
49
primary cell
41
cell line
34
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
artery
46
pancreas
38
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
661
AMP
45
HPAP
7
T1D
Genome assembly (visualization)
542
hg19
520
GRCh38
Lab
668
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
145
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
artery
BIOSAMPLE
ASSAY
713 results
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total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
ChIP-seq
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
+ See 32 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
endothelial cell of umbilical vein
1
cell line
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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