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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
48
single cell RNA-seq
32
pCHi-C
9
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
183
Transcription
9
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
267
October, 2019
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
209
tsv
184
bigWig
180
bam
50
fastq
11
bedpe bed3+
9
hic
3
bed narrowPeak
2
ibed
Organism
231
Homo sapiens
Biosample type
160
tissue
48
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
171
pancreas
39
epithelium
7
heart
5
musculature of body
4
blood vessel
4
connective tissue
4
vasculature
3
liver
2
brain
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
vein
Project
224
AMP
7
T1D
Genome assembly (visualization)
195
hg19
180
GRCh38
Lab
231
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
organ_slims!
artery
vein
BIOSAMPLE
ASSAY
231 results
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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
122
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 16 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
+ See 10 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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