Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
107
ATAC-seq
53
ChIP-seq
33
pCHi-C
10
Hi-C
5
GRO-seq
Assay category
205
Transcription
107
DNA accessibility
53
DNA binding
10
3D chromatin structure
Target of assay
30
histone
30
histone modification
30
narrow histone mark
23
control
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
317
August, 2021
288
October, 2019
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
299
bam
288
bigWig
234
tsv
50
tagAlign
30
bed narrowPeak
12
bedpe bed3+
10
hic
5
fastq
2
ibed
Organism
413
Homo sapiens
Biosample type
235
tissue
148
primary cell
13
cell line
12
in vitro differentiated cells
5
stem cell
Organ
197
liver
14
pancreas
7
heart
6
epithelium
6
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
361
AMP
52
T1D
Genome assembly (visualization)
295
hg19
223
GRCh38
5
hg18
Lab
368
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
413 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
GRO-seq
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 17 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
GM12878
1
HepG2
1
MCF-7
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
+ See 2 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download