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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ATAC-seq
13
total RNA-seq
10
Hi-C
3
ChIP-seq
2
pCHi-C
1
snATAC-seq
Assay category
43
DNA accessibility
13
Transcription
10
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
510
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
196
October, 2019
185
June, 2019
164
July, 2018
94
May, 2019
88
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
41
bed narrowPeak
40
bigWig
34
bam
18
fastq
15
tsv
12
bedpe bed3+
10
hic
2
ibed
1
bed bed3+
1
txt
Organism
71
Homo sapiens
Biosample type
57
tissue
7
cell line
6
in vitro differentiated cells
1
primary cell
Organ
29
pancreas
22
liver
6
epithelium
5
musculature of body
4
heart
3
blood vessel
3
vasculature
1
vein
Project
66
AMP
5
T1D
Genome assembly (visualization)
71
hg19
16
GRCh38
Lab
33
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
1
audit script error
organ_slims!
artery
BIOSAMPLE
ASSAY
71 results
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Clear Filters
ATAC-seq
total RNA-seq
Hi-C
ChIP-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
20
2
liver
20
1
1
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
+ See 3 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
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