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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
179
total RNA-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
188
DNA binding
179
Transcription
34
DNA accessibility
1
DNA methylation
Target of assay
158
histone
158
histone modification
86
broad histone mark
72
narrow histone mark
17
transcription factor
13
control
6
RNA binding protein
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
280
October, 2019
225
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
318
bigWig
297
bam
170
tsv
151
bed narrowPeak
90
tagAlign
18
bigBed narrowPeak
2
bed bed3+
Organism
419
Homo sapiens
Biosample type
206
primary cell
131
in vitro differentiated cells
61
tissue
21
cell line
Organ
61
pancreas
heart
26
epithelium
23
kidney
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
266
AMP
153
T1D
Genome assembly (visualization)
331
hg19
291
GRCh38
Lab
235
Kyle Gaulton, UCSD
184
AMP-T2D consortium
Audit category:
90
inconsistent ontology term
organ_slims!
artery
heart
BIOSAMPLE
ASSAY
419 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
37
5
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiomyocytes (cardiac muscle cell)
1
+ See 9 more…
tissue
islet of Langerhans
36
kidney
23
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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