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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
total RNA-seq
91
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
GRO-seq
1
RNA microarray
Assay category
413
Transcription
91
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
42
histone
42
histone modification
29
control
24
broad histone mark
20
transcription factor
18
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
13
February, 2018
12
July, 2019
9
August, 2021
9
December, 2017
2
February, 2020
2
January, 2018
1
August, 2018
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
October, 2017
1
October, 2019
Available data
471
bam
450
bigWig
413
tsv
67
fastq
24
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
8
tagAlign
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
520
Homo sapiens
Biosample type
487
tissue
24
in vitro differentiated cells
8
cell line
2
primary cell
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
433
epithelium
387
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
521
AMP
Genome assembly (visualization)
450
hg19
448
GRCh38
1
hg18
Lab
521
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
artery
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
521 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
GRO-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
4
18
1
white fat cell
1
cell line
H1-hESC
8
primary cell
mesenchymal stem cell of adipose
1
1
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