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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
5
total RNA-seq
4
DNase-seq
4
Hi-C
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
62
DNA binding
9
Transcription
6
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
31
broad histone mark
18
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
21
October, 2019
7
July, 2019
4
August, 2021
4
March, 2020
2
June, 2019
1
February, 2020
Available data
74
bam
60
bigWig
52
bed narrowPeak
51
bigBed narrowPeak
10
tsv
6
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
84
Homo sapiens
Biosample type
60
tissue
24
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
61
hg19
56
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
brain
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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