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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
45
DNA binding
9
Transcription
2
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
9
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
6
July, 2019
4
August, 2021
3
March, 2020
1
February, 2020
1
June, 2019
Available data
53
bam
43
bigWig
38
bed narrowPeak
37
bigBed narrowPeak
10
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
60
Homo sapiens
Biosample type
60
tissue
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
60
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
60
AMP-T2D consortium
organ_slims!
artery
epithelium
BIOSAMPLE
ASSAY
60 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
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