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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
34
DNA binding
9
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
50
histone
50
histone modification
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
23
May, 2019
12
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
47
bam
36
bigWig
28
bed narrowPeak
27
bigBed narrowPeak
10
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
58
Homo sapiens
Biosample type
38
tissue
20
primary cell
Organ
868
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
339
kidney
316
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
37
hg19
32
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
artery
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
58 results
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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
6
1
1
4
2
1
thoracic aorta
9
2
1
ascending aorta
8
1
2
primary cell
endothelial cell of umbilical vein
8
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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