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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
15
total RNA-seq
7
DNase-seq
4
single cell RNA-seq
3
ATAC-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
small RNA-seq
Assay category
20
Transcription
16
DNA binding
10
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
18
June, 2019
10
July, 2019
6
November, 2020
5
December, 2019
4
August, 2021
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
1
October, 2019
Available data
47
bam
42
bigWig
22
bed narrowPeak
20
tsv
16
bigBed narrowPeak
13
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
4
tagAlign
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
Organism
52
Homo sapiens
Biosample type
908
tissue
401
cell line
112
in vitro differentiated cells
52
primary cell
1
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
artery
1
bone element
1
bone marrow
1
pericardium
Project
51
AMP
1
T1D
Genome assembly (visualization)
46
hg19
42
GRCh38
Lab
51
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
primary cell
hepatocyte
4
5
1
1
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
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