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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
89
total RNA-seq
6
WGBS
4
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
211
DNA binding
89
Transcription
7
DNA accessibility
6
DNA methylation
Target of assay
135
histone
135
histone modification
72
broad histone mark
62
narrow histone mark
41
transcription factor
35
control
6
RNA binding protein
2
chromatin remodeller
Date released
487
February, 2021
313
August, 2017
157
July, 2018
104
May, 2022
76
October, 2018
72
September, 2018
70
February, 2023
63
May, 2021
56
November, 2019
39
April, 2018
24
July, 2019
22
June, 2019
22
October, 2019
19
September, 2020
16
March, 2020
16
November, 2020
11
September, 2017
9
August, 2021
8
January, 2021
8
November, 2018
7
August, 2020
6
October, 2017
5
March, 2019
4
August, 2018
3
February, 2020
3
October, 2022
2
May, 2019
1
August, 2022
1
January, 2018
1
June, 2018
1
May, 2023
Available data
240
fastq
239
bam
224
bigWig
95
bed narrowPeak
89
tsv
38
tagAlign
30
bed bed3+
20
bigBed narrowPeak
14
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
306
Homo sapiens
Biosample type
204
tissue
68
in vitro differentiated cells
41
primary cell
Organ
188
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
313
AMP
Genome assembly (visualization)
223
hg19
217
GRCh38
Lab
313
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
14
inconsistent control read length
1
inconsistent assembly
organ_slims!
artery
BIOSAMPLE
ASSAY
313 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
subcutaneous abdominal adipose tissue
36
3
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 1 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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