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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
6
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
total RNA-seq
Assay category
117
DNA binding
6
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
69
histone
69
histone modification
40
broad histone mark
34
transcription factor
28
narrow histone mark
14
control
4
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
72
bam
72
fastq
66
bigWig
46
bed narrowPeak
22
tagAlign
11
bed bed3+
3
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
1
tsv
Organism
127
Homo sapiens
Biosample type
69
in vitro differentiated cells
57
tissue
1
primary cell
Organ
249
pancreas
127
connective tissue
57
adipose tissue
55
epithelium
54
liver
26
musculature of body
3
heart
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
126
AMP
1
T1D
Genome assembly (visualization)
66
GRCh38
65
hg19
Lab
126
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
artery
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
total RNA-seq
in vitro differentiated cells
adipocyte
67
1
cardiac fibroblast
1
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
subcutaneous adipose tissue
1
primary cell
adult endothelial progenitor cell
1
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