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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
93
single cell RNA-seq
29
DNase-seq
17
total RNA-seq
10
WGBS
4
ATAC-seq
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
103
DNA binding
33
DNA accessibility
12
DNA methylation
3
3D chromatin structure
Target of assay
66
histone
66
histone modification
41
broad histone mark
25
narrow histone mark
24
control
13
transcription factor
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
92
August, 2021
57
April, 2019
33
June, 2019
22
July, 2019
16
May, 2019
9
November, 2018
8
March, 2020
8
October, 2019
7
December, 2018
7
January, 2019
3
May, 2021
2
February, 2020
1
February, 2023
1
October, 2017
Available data
159
bam
136
bigWig
114
tsv
112
bed narrowPeak
102
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
24
fastq
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
266
Homo sapiens
Biosample type
254
tissue
11
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
266
AMP
Genome assembly (visualization)
135
GRCh38
130
hg19
Lab
266
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
spleen
20
1
2
1
1
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primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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