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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
28
DNase-seq
23
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
31
DNA accessibility
23
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
31
June, 2019
22
July, 2019
15
April, 2019
7
March, 2020
5
May, 2019
3
May, 2021
3
October, 2019
2
February, 2020
1
February, 2023
Available data
113
tsv
76
bam
60
bigWig
38
bed narrowPeak
35
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
181
Homo sapiens
Biosample type
171
tissue
9
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
Genome assembly (visualization)
60
GRCh38
56
hg19
Lab
181
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
artery
target.investigated_as!
histone
BIOSAMPLE
ASSAY
181 results
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single cell RNA-seq
DNase-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
11
3
4
2
1
1
1
heart
1
18
2
4
1
1
1
heart right ventricle
17
1
2
1
2
1
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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