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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
36
DNase-seq
7
ATAC-seq
6
Hi-C
6
total RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
60
DNA binding
44
DNA accessibility
6
3D chromatin structure
6
Transcription
1
DNA methylation
Target of assay
46
histone
46
histone modification
29
broad histone mark
17
narrow histone mark
14
control
Date released
64
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
108
bam
85
bigWig
84
bed narrowPeak
77
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
36
bed bed3+
6
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
117
Homo sapiens
Biosample type
95
tissue
22
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
92
hg19
87
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
artery
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
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