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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
63
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
42
transcription factor
31
histone
histone modification
26
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
649
February, 2021
318
November, 2017
314
May, 2020
297
August, 2021
259
May, 2021
212
August, 2017
200
May, 2022
197
June, 2019
170
February, 2023
168
July, 2018
110
October, 2019
105
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
25
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
69
bam
63
fastq
47
bigWig
44
bed narrowPeak
34
bigBed narrowPeak
6
bed bed3+
4
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
79
Homo sapiens
Biosample type
47
tissue
19
in vitro differentiated cells
6
cell line
6
primary cell
1
stem cell
Organ
46
liver
11
epithelium
10
pancreas
7
embryo
6
connective tissue
Project
79
AMP
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
69
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
8
inconsistent ontology term
Audit category:
4
inconsistent control read length
organ_slims!
artery
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
tissue
liver
38
right lobe of liver
5
islet of Langerhans
4
in vitro differentiated cells
pancreatic endoderm
5
Posterior foregut
3
definitive endodermal cell
3
hepatocyte
3
primitive gut cell
3
+ See 1 more…
cell line
EndoC_BH1
6
primary cell
osteoblast
4
1
1
stem cell
hESC
1
See all biosamples
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