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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
Assay category
98
DNA binding
Target of assay
725
histone modification
724
histone
494
transcription factor
378
narrow histone mark
345
broad histone mark
299
control
98
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
April, 2019
4
December, 2017
3
May, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
92
bam
90
bigWig
89
bed narrowPeak
84
fastq
82
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
98
Homo sapiens
Biosample type
65
cell line
22
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
9
connective tissue
9
pancreas
5
adipose tissue
5
heart
3
blood vessel
3
epithelium
3
vasculature
artery
1
kidney
Project
98
AMP
Genome assembly (visualization)
89
hg19
85
GRCh38
Lab
92
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
artery
biosample_type!
primary cell
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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