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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
Assay category
345
DNA binding
Target of assay
725
histone modification
724
histone
494
transcription factor
378
narrow histone mark
345
broad histone mark
299
control
98
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
93
August, 2017
56
May, 2019
50
November, 2017
37
April, 2019
29
October, 2019
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
275
bigWig
274
bed narrowPeak
264
bam
207
bigBed narrowPeak
96
tagAlign
85
fastq
28
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
341
Homo sapiens
Biosample type
269
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
51
pancreas
41
liver
40
connective tissue
37
heart
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
16
nerve
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
345
AMP
Genome assembly (visualization)
262
GRCh38
239
hg19
Lab
334
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
organ_slims!
artery
biosample_type!
primary cell
BIOSAMPLE
ASSAY
345 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
islet of Langerhans
14
+ See 24 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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