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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
530
ATAC-seq
355
single cell RNA-seq
212
DNase-seq
87
RNA microarray
76
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
75
Homo sapiens
Biosample type
48
primary cell
28
tissue
Organ
11
pancreas
10
lung
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
10
LungMap
10
T1D
8
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
organ_slims!
blood
assay_slims!
DNA binding
files.file_type!
csv
BIOSAMPLE
ASSAY
76 results
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snATAC-seq
primary cell
Langerhans cell
48
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
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