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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
48
snATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
204
DNA accessibility
184
Transcription
72
DNA binding
58
DNA methylation
9
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
27
February, 2021
12
February, 2023
3
October, 2019
2
August, 2017
Available data
60
zippedFastqFolder
48
bam
48
bigWig
28
fastq
12
tsv
3
bed narrowPeak
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
204
Homo sapiens
Biosample type
204
primary cell
135
tissue
25
in vitro differentiated cells
18
cell line
Organ
42
epithelium
39
pancreas
blood
8
bodily fluid
2
kidney
1
blood vessel
1
vasculature
1
vein
Project
117
AMP
87
HPAP
Genome assembly (visualization)
107
hg19
GRCh38
Lab
117
AMP-T2D consortium
87
Klaus Kaestner, Upenn
Audit category:
27
audit script error
10
inconsistent ontology term
organ_slims!
blood
assembly!
GRCh38
BIOSAMPLE
ASSAY
204 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
pancreatic beta cell
13
macrophage
11
pancreatic acinar cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
monocyte
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
skeletal muscle myoblast
2
endothelial cell of umbilical vein
1
immature natural killer cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
See all biosamples
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