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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
690
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
690
DNA binding
189
DNA accessibility
Target of assay
344
transcription factor
343
histone
343
histone modification
221
broad histone mark
122
narrow histone mark
81
recombinant protein
73
RNA binding protein
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
64
April, 2019
61
November, 2018
57
October, 2019
50
December, 2017
45
October, 2018
23
August, 2017
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
2723
bam
2501
bigWig
1468
bed narrowPeak
1321
tsv
889
fastq
879
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
155
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
csv
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
873
Homo sapiens
Biosample type
561
tissue
301
cell line
primary cell
17
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
879
AMP
Genome assembly (visualization)
839
GRCh38
807
hg19
Lab
879
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
blood
audit.ERROR.category!
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
879 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 53 more…
cell line
HepG2
293
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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