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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
27
ChIP-seq
7
single cell RNA-seq
4
Hi-C
2
RNA microarray
Assay category
29
DNA accessibility
27
DNA binding
7
Transcription
4
3D chromatin structure
Target of assay
27
transcription factor
2
chromatin remodeller
Date released
32
February, 2021
27
December, 2017
4
December, 2019
3
October, 2022
1
August, 2022
1
May, 2022
1
October, 2019
Available data
54
fastq
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
9
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
3
cool
1
bed bed3+
Organism
69
Homo sapiens
Biosample type
36
tissue
31
primary cell
2
in vitro differentiated cells
Organ
27
liver
7
kidney
5
epithelium
4
pancreas
blood
1
blood vessel
1
bodily fluid
1
musculature of body
1
vasculature
1
vein
Project
39
AMP
30
HPAP
Genome assembly (visualization)
32
hg19
27
GRCh38
Lab
39
AMP-T2D consortium
30
Klaus Kaestner, Upenn
Audit category:
353
inconsistent ontology term
42
audit script error
27
inconsistent control
1
inconsistent replicate
organ_slims!
blood
BIOSAMPLE
ASSAY
69 results
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snATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
RNA microarray
tissue
liver
27
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
+ See 1 more…
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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