Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
18
ATAC-seq
9
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA binding
18
DNA accessibility
11
Transcription
4
3D chromatin structure
1
DNA sequencing
Target of assay
12
transcription factor
7
control
3
histone
3
histone modification
3
nucleotide modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
36
August, 2021
16
May, 2021
6
February, 2023
6
March, 2020
6
November, 2020
2
March, 2023
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2017
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
75
Homo sapiens
Biosample type
830
tissue
471
primary cell
103
in vitro differentiated cells
79
cell line
7
stem cell
Organ
35
liver
29
pancreas
28
epithelium
4
kidney
blood
1
bodily fluid
1
mammary gland
Project
72
AMP
5
T1D
2
community
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
34
Bing Ren, UCSD
32
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
30
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
blood
files.file_type!
bam
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
19
9
2
2
2
1
EndoC_BH1
18
6
1
3
2
2
1
EndoC-BH1
1
1
HEK293T
2
MCF-7
1
+ See 6 more…
See all biosamples
Download