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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
17
pCHi-C
11
ATAC-seq
10
snATAC-seq
7
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
88
DNA binding
21
DNA accessibility
7
Transcription
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
23
February, 2023
8
January, 2021
5
March, 2020
Available data
186
bam
186
bigWig
tsv
88
bed narrowPeak
84
tagAlign
Organism
138
Homo sapiens
Biosample type
100
primary cell
31
tissue
7
cell line
Organ
32
pancreas
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2695
AMP
318
HPAP
138
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
132
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
blood
files.file_type!
tsv
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
tissue
islet of Langerhans
2
11
6
7
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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