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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1811
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
76
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
81
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2017
1
August, 2022
1
November, 2018
1
October, 2019
Available data
29
fastq
21
zippedFastqFolder
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
bed bed3+
1
tar
1
txt
Organism
80
Homo sapiens
Biosample type
49
primary cell
32
tissue
Organ
13
pancreas
10
lung
blood
8
bodily fluid
7
kidney
1
blood vessel
1
brain
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
13
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
6
hg19
Lab
48
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
AMP-T2D consortium
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
organ_slims!
blood
files.file_type!
vcf
BIOSAMPLE
ASSAY
81 results
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snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
48
endothelial cell of umbilical vein
1
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
frontal cortex
1
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