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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ChIP-seq
1
FAIRE-seq
1
Hi-C
Assay category
2
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
3
transcription factor
RNA binding protein
Date released
2
November, 2017
1
March, 2019
1
October, 2019
Available data
3239
bam
3018
bigWig
1668
bed narrowPeak
1600
tsv
1219
fastq
905
bigBed narrowPeak
398
tagAlign
313
bed broadPeak
276
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
4
Homo sapiens
Biosample type
2
cell line
1
primary cell
1
tissue
Organ
2
liver
1
blood vessel
1
epithelium
1
pancreas
1
vasculature
1
vein
Project
4
AMP
Genome assembly (visualization)
4
hg19
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
organ_slims!
blood
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
4 results
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ChIP-seq
FAIRE-seq
Hi-C
cell line
HepG2
2
primary cell
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
1
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