Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
8
single cell RNA-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
36
DNA methylation
8
Transcription
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
23
July, 2019
8
November, 2018
6
August, 2017
6
February, 2021
3
November, 2017
1
October, 2019
1
September, 2018
Available data
3332
bam
3114
bigWig
1763
bed narrowPeak
1600
tsv
1298
fastq
988
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
48
Homo sapiens
Biosample type
31
tissue
13
primary cell
4
cell line
Organ
9
kidney
8
heart
7
epithelium
7
liver
6
pancreas
4
musculature of body
3
connective tissue
3
vasculature
2
adipose tissue
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
48
AMP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
5
audit script error
2
inconsistent ontology term
organ_slims!
blood
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
RRBS
WGBS
single cell RNA-seq
ChIP-seq
FAIRE-seq
tissue
kidney
1
5
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 11 more…
primary cell
pancreatic cell
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
+ See 7 more…
cell line
HepG2
1
3
See all biosamples
Download