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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
Assay category
55
DNA binding
Target of assay
310
transcription factor
89
recombinant protein
77
control
55
RNA binding protein
37
histone
37
histone modification
20
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
1
August, 2021
1
November, 2019
Available data
54
bam
53
bed narrowPeak
53
bigWig
53
fastq
51
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
55
Homo sapiens
Biosample type
55
cell line
28
tissue
11
in vitro differentiated cells
10
primary cell
Organ
54
liver
blood
10
bodily fluid
1
epithelium
1
pancreas
Project
55
AMP
Genome assembly (visualization)
52
hg19
48
GRCh38
Lab
54
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
organ_slims!
blood
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
cell line
HepG2
54
EndoC_BH1
1
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