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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
Assay category
91
DNA binding
Target of assay
967
histone modification
966
histone
488
narrow histone mark
477
broad histone mark
410
transcription factor
329
control
91
RNA binding protein
89
recombinant protein
21
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
30
November, 2017
19
November, 2018
11
October, 2018
6
August, 2017
5
May, 2019
5
May, 2021
5
May, 2024
4
April, 2019
4
December, 2017
June, 2019
1
August, 2021
1
November, 2019
Available data
92
bigWig
91
bed narrowPeak
89
bam
79
bigBed narrowPeak
79
fastq
9
bed broadPeak
bigBed broadPeak
2
bed bed3+
1
tar
Organism
91
Homo sapiens
Biosample type
51
cell line
28
tissue
11
in vitro differentiated cells
1
primary cell
Organ
54
liver
blood
10
bodily fluid
10
heart
9
connective tissue
9
pancreas
5
adipose tissue
4
epithelium
3
blood vessel
3
vasculature
2
kidney
1
artery
Project
91
AMP
Genome assembly (visualization)
79
GRCh38
77
hg19
Lab
80
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
organ_slims!
blood
month_released!
June, 2019
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
cell line
HepG2
50
EndoC_BH1
1
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
kidney epithelial cell
1
See all biosamples
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