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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
70
DNA binding
12
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
17
control
Date released
73
October, 2019
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
82
bam
60
bed narrowPeak
59
bigWig
52
bigBed narrowPeak
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
95
Homo sapiens
Biosample type
95
tissue
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
95
AMP-T2D consortium
organ_slims!
blood
month_released!
June, 2019
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
5
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