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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
total RNA-seq
84
RNA microarray
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
15
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
568
Transcription
49
DNA accessibility
15
DNA binding
6
DNA methylation
Target of assay
6
histone
6
histone modification
5
transcription factor
4
broad histone mark
4
control
2
narrow histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
584
bam
564
tsv
562
bigWig
89
txt
57
fastq
29
bed narrowPeak
8
tagAlign
6
bigBed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
727
Homo sapiens
Biosample type
552
tissue
101
cell line
48
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
blood
18
bodily fluid
8
kidney
8
liver
8
skeleton
7
spleen
6
limb
Project
682
AMP
45
HPAP
Genome assembly (visualization)
585
hg19
579
GRCh38
Lab
682
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
blood
BIOSAMPLE
ASSAY
727 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
5
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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