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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
84
RNA microarray
42
ATAC-seq
27
snATAC-seq
21
ChIP-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
Hi-C
2
pCHi-C
Assay category
583
Transcription
69
DNA accessibility
21
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
6
transcription factor
5
control
4
narrow histone mark
1
RNA binding protein
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
23
October, 2017
22
February, 2020
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
625
bam
582
bigWig
579
tsv
89
txt
54
bed narrowPeak
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
770
Homo sapiens
Biosample type
579
tissue
112
cell line
48
primary cell
31
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
87
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
48
epithelium
8
kidney
8
skeleton
limb
3
liver
Project
725
AMP
45
HPAP
Genome assembly (visualization)
627
hg19
619
GRCh38
Lab
725
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
150
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
blood
limb
BIOSAMPLE
ASSAY
770 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snDrop-seq
Hi-C
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
1
kidney
5
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cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
27
1
13
1
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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