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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
68
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
53
transcription factor
20
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
6
broad histone mark
5
chromatin remodeller
5
control
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
245
October, 2019
205
February, 2023
200
May, 2022
186
June, 2019
168
July, 2018
113
May, 2019
103
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
23
October, 2017
22
February, 2020
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
131
bam
99
bigWig
98
bed narrowPeak
73
fastq
61
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
134
Homo sapiens
Biosample type
66
tissue
62
cell line
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
53
liver
16
epithelium
blood
15
bodily fluid
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
134
AMP
Genome assembly (visualization)
124
GRCh38
118
hg19
Lab
134
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
blood
limb
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
19
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
45
1
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
See all biosamples
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