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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
11
ChIP-seq
5
pCHi-C
2
WGBS
1
RRBS
Assay category
29
DNA accessibility
19
Transcription
11
DNA binding
3
DNA methylation
Target of assay
9
control
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
5
November, 2018
4
December, 2018
1
February, 2020
1
January, 2019
1
July, 2019
1
June, 2019
1
March, 2020
1
October, 2017
Available data
47
bed narrowPeak
31
bam
24
fastq
22
bigWig
bigBed narrowPeak
6
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
67
Homo sapiens
Biosample type
65
tissue
2
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
29
hg19
3
GRCh38
Lab
67
AMP-T2D consortium
organ_slims!
blood
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
67 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
WGBS
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
spleen
1
8
1
2
primary cell
retinal pigment epithelial cell
1
1
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