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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
981
histone modification
980
histone
498
narrow histone mark
481
broad histone mark
431
transcription factor
337
control
99
RNA binding protein
89
recombinant protein
24
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
5
November, 2018
3
August, 2017
1
December, 2017
Available data
24
bam
24
bed narrowPeak
24
bigWig
24
fastq
22
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
24
Homo sapiens
Biosample type
20
cell line
3
in vitro differentiated cells
1
primary cell
Organ
21
liver
blood
9
bodily fluid
2
connective tissue
1
epithelium
Project
24
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
organ_slims!
blood
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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