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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
DNA binding
111
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Date released
92
August, 2021
28
June, 2019
22
July, 2019
7
March, 2020
3
May, 2021
3
October, 2019
2
February, 2020
1
February, 2023
Available data
113
tsv
53
bam
53
bigWig
31
bed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
28
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
158
Homo sapiens
Biosample type
151
tissue
6
primary cell
1
in vitro differentiated cells
Organ
546
pancreas
530
connective tissue
418
adipose tissue
259
heart
255
kidney
241
epithelium
239
liver
158
bone element
134
vasculature
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
53
GRCh38
49
hg19
Lab
158
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
blood vessel
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
158 results
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single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
3
4
2
1
1
1
heart
1
18
4
1
1
1
heart right ventricle
17
1
1
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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