Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
307
ChIP-seq
Assay category
307
DNA binding
Target of assay
247
histone
247
histone modification
145
narrow histone mark
102
broad histone mark
55
control
5
transcription factor
Date released
90
May, 2021
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
2
February, 2021
Available data
2930
bam
2747
bigWig
1546
bed narrowPeak
1443
tsv
1068
fastq
921
bigBed narrowPeak
307
tagAlign
268
bed broadPeak
257
bigBed broadPeak
229
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
307
Homo sapiens
Biosample type
179
tissue
88
primary cell
26
in vitro differentiated cells
14
cell line
Organ
118
brain
66
liver
7
epithelium
6
artery
blood vessel
6
heart
6
vasculature
3
pancreas
1
pituitary gland
Project
223
AMP
84
T1D
Genome assembly (visualization)
225
GRCh38
196
hg19
Lab
223
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
organ_slims!
blood vessel
assay_slims!
DNA sequencing
month_released!
August, 2017
BIOSAMPLE
ASSAY
307 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
iPSC derived cell line
2
See all biosamples
Download