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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
Assay category
200
Transcription
118
DNA accessibility
109
DNA binding
53
DNA methylation
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
42
narrow histone mark
35
broad histone mark
24
control
8
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
21
September, 2018
19
December, 2017
13
November, 2019
7
October, 2019
6
June, 2019
5
May, 2019
4
August, 2021
4
May, 2021
3
November, 2017
1
March, 2020
Available data
109
bam
86
bigWig
85
bed narrowPeak
69
fastq
24
bigBed narrowPeak
7
tagAlign
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
109
Homo sapiens
Biosample type
72
primary cell
22
in vitro differentiated cells
15
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
107
AMP
2
T1D
Genome assembly (visualization)
86
hg19
85
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ChIP-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
pancreatic acinar cell
8
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
See all biosamples
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