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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
834
ChIP-seq
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
834
DNA binding
205
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
282
August, 2017
201
October, 2019
193
May, 2020
160
June, 2019
159
August, 2021
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
66
July, 2019
65
May, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
35
March, 2020
28
May, 2022
26
November, 2018
22
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1759
bam
1662
bigWig
1061
tsv
714
bed narrowPeak
496
bigBed narrowPeak
348
fastq
238
tagAlign
206
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2413
Homo sapiens
Biosample type
2422
tissue
857
primary cell
575
cell line
352
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
482
adipose tissue
443
pancreas
340
liver
274
heart
261
brain
224
kidney
146
bone element
114
limb
blood vessel
95
vasculature
81
musculature of body
42
nerve
36
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2336
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1634
GRCh38
1566
hg19
Lab
2199
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
assay_title!
ATAC-seq
organ_slims!!
blood vessel
BIOSAMPLE
ASSAY
2422 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
liver
167
145
1
2
3
1
1
1
1
kidney
49
27
64
13
6
1
1
1
bone element
84
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