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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
75
ChIP-seq
Assay category
75
DNA binding
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
13
August, 2017
Available data
3012
bam
2779
bigWig
1532
tsv
1448
bed narrowPeak
1343
fastq
763
bigBed narrowPeak
392
tagAlign
161
txt
153
zippedFastqFolder
112
bed broadPeak
75
bigBed broadPeak
67
bed bed3+
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
58
cell line
17
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
blood vessel
2
vein
Project
75
AMP
Genome assembly (visualization)
75
hg19
60
GRCh38
Lab
75
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
choroid plexus epithelial cell
2
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