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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
28
DNase-seq
17
total RNA-seq
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
83
DNA binding
31
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
16
May, 2019
14
July, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
129
bam
114
bigWig
113
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
233
Homo sapiens
Biosample type
221
tissue
11
primary cell
1
in vitro differentiated cells
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
354
kidney
345
heart
286
brain
234
vasculature
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
233
AMP
Genome assembly (visualization)
116
hg19
113
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
assay_title!
WGBS
BIOSAMPLE
ASSAY
233 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
2
1
1
1
heart
1
14
18
4
1
1
heart right ventricle
17
13
1
1
1
1
right cardiac atrium
18
6
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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