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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
total RNA-seq
194
ChIP-seq
144
single cell RNA-seq
122
ATAC-seq
76
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
122
DNA accessibility
Date released
77
May, 2022
August, 2021
14
February, 2023
11
May, 2023
7
August, 2020
5
May, 2021
4
March, 2019
3
September, 2020
1
October, 2017
Available data
40
bed narrowPeak
39
bigWig
39
zippedFastqFolder
30
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
122
Homo sapiens
Biosample type
65
tissue
49
primary cell
8
in vitro differentiated cells
Organ
83
pancreas
49
epithelium
20
liver
11
kidney
Project
62
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
49
hg19
24
GRCh38
Lab
AMP-T2D consortium
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
11
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
month_released!
August, 2021
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
34
liver
20
kidney
11
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
neuron cell of Hypothalamus (neuron)
1
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