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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
938
ChIP-seq
442
total RNA-seq
263
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
30
DNase-seq
14
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
30
DNA accessibility
Date released
22
June, 2019
4
October, 2019
3
August, 2017
1
November, 2020
Available data
28
bam
28
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
26
bed broadPeak
26
bigBed broadPeak
24
bed bed3+
2
fastq
Organism
30
Homo sapiens
Biosample type
tissue
27
primary cell
2
cell line
1
in vitro differentiated cells
Organ
19
epithelium
13
kidney
7
connective tissue
6
vasculature
5
brain
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
30
AMP
Genome assembly (visualization)
26
GRCh38
22
hg19
Lab
30
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
blood vessel
biosample_type!
tissue
BIOSAMPLE
ASSAY
30 results
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DNase-seq
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 15 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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