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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1473
ChIP-seq
1227
total RNA-seq
285
ATAC-seq
176
DNase-seq
170
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
snATAC-seq
26
WGBS
23
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
23
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
4
October, 2019
3
August, 2021
2
November, 2019
1
December, 2018
1
March, 2019
Available data
16
hic
15
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
Organism
23
Homo sapiens
Biosample type
15
tissue
primary cell
4
cell line
4
in vitro differentiated cells
Organ
6
musculature of body
6
pancreas
4
limb
3
heart
3
liver
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
23
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
19
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
blood vessel
biosample_type!
primary cell
BIOSAMPLE
ASSAY
23 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
heart
1
heart left ventricle
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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