Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1732
ChIP-seq
1472
total RNA-seq
485
ATAC-seq
357
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
73
DNA methylation
Date released
63
May, 2022
33
February, 2021
16
January, 2021
10
April, 2020
10
July, 2019
9
August, 2017
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
156
Homo sapiens
Biosample type
103
primary cell
53
tissue
1
cell line
Organ
62
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
95
HPAP
34
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
157 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 11 more…
cell line
HepG2
1
See all biosamples
Download